Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs116778662 chr16:88056062 A/T 0 280 25.6 26.37 8.8 KM Plot
KIRP rs11680660 chr2:100931738 G/C 1.66E-5 282 25.6 26 25.57 KM Plot
KIRP rs11681053 chr2:128465547 C/T 1.26E-6 287 25.97 22.57 8.47 KM Plot
KIRP rs116866756 chr13:47008006 T/C 6.27E-7 287 24.73 34.38 23.23 KM Plot
KIRP rs11689020 chr2:128488334 A/G 1.1E-6 289 8.47 22.12 26.2 KM Plot
KIRP rs116905847 chr17:80814026 T/C 5.48E-9 289 26.37 25.5 16.4 KM Plot
KIRP rs11696864 chr20:6092017 T/G 0.000115 289 25.82 26.4 9 KM Plot
KIRP rs117068205 chr10:43132070 G/A 6.87E-5 289 25.57 27.47 11.43 KM Plot
KIRP rs11707014 chr3:124583183 G/A 1.67E-5 286 25.93 26.32 16.53 KM Plot
KIRP rs117116959 chr6:148645059 G/A 0.000103 285 26.38 17.47 18.2 KM Plot
KIRP rs117151732 chr13:47031007 A/T 1.9E-5 285 25.23 30.2 25.1 KM Plot
KIRP rs117158873 chr6:148670468 G/A 9.7E-5 286 26.4 18.67 18.2 KM Plot
KIRP rs11716195 chr3:197174577 T/C 1.5E-5 278 25.02 26.8 18.45 KM Plot
KIRP rs11717276 chr3:197175499 T/C 1.5E-5 278 25.02 26.8 18.45 KM Plot
KIRP rs117207148 chr13:46988763 G/T 6.35E-7 289 25.02 30.2 23.23 KM Plot